PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g18370.19.p
Common NameBRADI_1g18370, LOC100843512
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 720aa    MW: 78179.4 Da    PI: 5.7872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g18370.19.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-054769123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cgk F r  nL+ H r H
  Bradi1g18370.19.p 47 FVCEVCGKGFQRDQNLQLHRRGH 69
                       89******************988 PP

2zf-C2H2140.00015125146223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         Cp Cgk++  + +Lk H + +
  Bradi1g18370.19.p 125 ACPRCGKRYAVQADLKAHAKAC 146
                        6*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.3E-84669No hitNo description
SMARTSM003550.0144769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6354769IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-54769IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035511089119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-5112144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.3E-8119144No hitNo description
PROSITE profilePS501578.663124152IPR007087Zinc finger, C2H2
SMARTSM0035590124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MLPNPPEPQP AEATAPAKKK RNLPGTPDPD AEVIALSPGT LMASNRFVCE VCGKGFQRDQ  60
NLQLHRRGHN LPWRLRQPGG AAPRRRRVYV CPDPGCVHHS PARALGDLTG IKKHFCRKHG  120
EKRWACPRCG KRYAVQADLK AHAKACGTRE YRCGCGTLFT RRDSFTTHRS